IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Scientific Reports
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing | Scientific Reports
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
NGS data logistics
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Alignment with STAR | Introduction to RNA-Seq using high-performance computing - ARCHIVED
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
Assessment of mapping strategies for determining the 5□-end of mRNAs and long-noncoding RNAs with short read sequences | bioRxiv
First steps with NGS data
eKLIPse: a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data - Genetics in Medicine
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
SIns: A Novel Insertion Detection Approach Based on Soft-Clipped Reads | Genetics - Frontiers
Preferences | Integrative Genomics Viewer
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
What is local realignment and what is the problem it solves? - Bioinformatics Stack Exchange
Reads filtering · Issue #879 · igvteam/igv.js · GitHub
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
soft clipping primers from BAM files using sequences · Issue #3 · tommyau/bamclipper · GitHub
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly | Genome Medicine | Full Text
Discordant reads are blue (plus strand) or red (minus strand). Soft... | Download Scientific Diagram
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
![PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/16b34a01c549bc1b12b6c5a17e85e1db117f26e3/2-Figure1-1.png "PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar")
PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Robust mapping of polyadenylated and non-polyadenylated RNA 3′ ends at nucleotide resolution by 3′-end sequencing - ScienceDirect
